Main input:
RELOAD THIS TOOL TO UPLOAD A NEW INPUT
FILE!!!
Additional annotation input:
Choose genes of interest:
Sequence source:
Other optional input:
General configuration:
Colors
Taxonomy DB location:
Some new taxa have
invalid IDs
(either in newTaxa.txt or in the main
profile input or both). IDs of non-NCBI taxa
have to be greater than 999999005.
Please replace those IDs before
continuing!
NCBI taxonomy information of some taxa
can neither
- be retrieved
from NCBI (Source="ncbi") nor
- be found in
PhyloProfile/data/newTaxa.txt (Source="new")
file
Please add
taxonomy information for those unknown taxa and
reload the tool
to continue!
NCBI taxonomy information of some taxa
can either
- be retrieved
from NCBI (Source="ncbi") or
- be found in
PhyloProfile/data/newTaxa.txt (Source="new")
file
Click here to
get required taxonomy information for those
taxa!
Seed (super)taxon:
Select taxonomy rank:
Choose (super)taxon of interest:
Order seed IDs
Order taxa
Please select subset of genes and/
or taxa for customized profile!
If frequency smaller or higher than Freq cutoff, labels will be grouped as [Other]
Drag to select, then double click to zoom in. Double click empty space to zoom out
Click on data point to select
Group comparison
Select in-group by supertaxon
Upload sequence(s) / In-group taxa
Warning: "strain" is not a supported taxonomy rank
for this function.
Please choose another rank.
Update NCBI taxonomy
Reset taxonomy data
Export current taxonomy files
Import your own taxonomy files
NOTE: Depending on your choice in Download filtered data
-> Main data, either all or only representative sequences
will be downloaded!
Download processed data
Output dir:
Export plot settings
Output dir:
File name: